Package: simfish 0.2-08.9010

Ian Jonsen

simfish: simulate fish tracks & acoustic detections

facilitates simulation of fish tracks in featureless and semi-realistic environments (coastal oceans, fjords, and lakes). A user-defined raster defining the water body - land boundaries is used to constrain simulated tracks. Fish movements are simulated (currently) as either a correlated random walk or a biased & correlated random walk, with the bias toward a defined Centre-of-Attraction. A potential function is used to ensure the tracks avoid land. The package can also be used to simulate detections of acoustically-tagged fish by acoustic receivers at user-defined locations.

Authors:Ian Jonsen

simfish_0.2-08.9010.tar.gz
simfish_0.2-08.9010.zip(r-4.5)simfish_0.2-08.9010.zip(r-4.4)simfish_0.2-08.9010.zip(r-4.3)
simfish_0.2-08.9010.tgz(r-4.4-any)simfish_0.2-08.9010.tgz(r-4.3-any)
simfish_0.2-08.9010.tar.gz(r-4.5-noble)simfish_0.2-08.9010.tar.gz(r-4.4-noble)
simfish_0.2-08.9010.tgz(r-4.4-emscripten)simfish_0.2-08.9010.tgz(r-4.3-emscripten)
simfish.pdf |simfish.html
simfish/json (API)

# Install 'simfish' in R:
install.packages('simfish', repos = c('https://mhpob.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ianjonsen/simfish/issues

On CRAN:

8 exports 0.09 score 75 dependencies 3 scripts

Last updated 9 months agofrom:94abda3265. Checks:OK: 1 ERROR: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 22 2024
R-4.5-winERRORAug 22 2024
R-4.5-linuxERRORAug 22 2024
R-4.4-winERRORAug 22 2024
R-4.4-macERRORAug 22 2024
R-4.3-winERRORAug 22 2024
R-4.3-macERRORAug 22 2024

Exports:calc_pdrffind_routegenerate_envmappdetsim_detectsim_fishsim_par

Dependencies:abindaskpassBHbootCircStatsclassclassIntclicolorspacecpp11crayoncurlDBIdplyre1071fansifarvergenericsgeometriesggplot2gluegtablehttrigraphisobandjsonliteKernSmoothlabelinglatticelifecyclelubridatelwgeommagrittrMASSMatrixmgcvmimemunsellnabornlmeopensslpathroutrpillarpkgconfigproxypurrrR6rasterRColorBrewerRcppRcppEigenrlangrnaturalearths2scalessfsfheaderssfnetworksspstarsstringistringrsysterratibbletidygraphtidyrtidyselecttimechangeunitsutf8vctrsviridisLitewithrwk

Overview

Rendered fromoverview.Rmdusingknitr::rmarkdownon Aug 22 2024.

Last update: 2023-04-27
Started: 2023-04-05