Package: yaps
Title: Track Estimation using YAPS (Yet Another Positioning Solver)
Version: 1.2.5
Authors@R: c(	person("Henrik", "Baktoft", email = "hba@aqua.dtu.dk", role = c("cre", "aut"), comment=c(ORCID = "0000-0002-3644-4960")),
				person("Karl", "Gjelland", role=c("aut"), comment=c(ORCID = "0000-0003-4036-4207")),
				person("Uffe H.", "Thygesen", role=c("aut"), comment=c(ORCID = "0000-0002-4311-6324")),
				person("Finn", "Økland", role=c("aut"), comment=c(ORCID = "0000-0002-1938-5460"))
			)
Description: Estimate tracks of animals tagged with acoustic
        transmitters. 'yaps' was introduced in 2017 as a transparent
        open-source tool to estimate positions of fish (and other
        aquatic animals) tagged with acoustic transmitters. Based on
        registrations of acoustic transmitters on hydrophones
        positioned in a fixed array, 'yaps' enables users to
        synchronize the collected data (i.e. correcting for drift in
        the internal clocks of the hydrophones/receivers) and
        subsequently to estimate tracks of the tagged animals. The
        paper introducing 'yaps' is available in open access at
        Baktoft, Gjelland, Økland & Thygesen (2017)
        <doi:10.1038/s41598-017-14278-z>. Also check out our cookbook
        with a completely worked through example at Baktoft, Gjelland,
        Økland, Rehage, Rodemann, Corujo, Viadero & Thygesen (2019)
        <DOI:10.1101/2019.12.16.877688>. Additional tutorials will
        eventually make their way onto the project website at
        <https://baktoft.github.io/yaps/>.
Depends: R (>= 3.5.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
LinkingTo: Rcpp, TMB, RcppEigen
Imports: circular, cowplot, data.table, ggplot2, ggrepel, nloptr, plyr,
        Rcpp, reshape2, stats, tictoc, TMB, viridis, zoo
Remotes: spkaluzny/splusTimeSeries, spkaluzny/splusTimeDate
Suggests: caTools, covr, knitr, rmarkdown, testthat (>= 2.1.0), vdiffr
URL: https://github.com/baktoft/yaps, https://baktoft.github.io/yaps/
BugReports: https://github.com/baktoft/yaps/issues
Config/pak/sysreqs: cmake libicu-dev
Repository: https://mhpob.r-universe.dev
Date/Publication: 2023-11-07 12:14:40 UTC
RemoteUrl: https://github.com/baktoft/yaps
RemoteRef: HEAD
RemoteSha: ed315f92f4cedb79c4aacd5935603beb30276bab
NeedsCompilation: yes
Packaged: 2026-06-24 05:48:25 UTC; root
Author: Henrik Baktoft [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-3644-4960>),
  Karl Gjelland [aut] (ORCID: <https://orcid.org/0000-0003-4036-4207>),
  Uffe H. Thygesen [aut] (ORCID: <https://orcid.org/0000-0002-4311-6324>),
  Finn Økland [aut] (ORCID: <https://orcid.org/0000-0002-1938-5460>)
Maintainer: Henrik Baktoft <hba@aqua.dtu.dk>