{
  "_id": "6a122c5facfb0bcc41d078c2",
  "Package": "TelemetrySpace",
  "Version": "1.1.0",
  "Title": "Spatial point process and random field models for electronic\ntagging data",
  "Description": "A collection of tools to fit spatial models to several\ntypes of telemetry data. Models are provided to account for the\ndetection process when estimating individual centers of\nactivity from acoustic telemetry data and to incorporate data\nfrom stationary test transmitters when available. Bayesian\nversions of models are fitted using Stan (http://mc-stan.org/).\nMaximum likelihood versions are fitted using Template Model\nBuilder (https://kaskr.github.io/adcomp/index.html).",
  "Authors@R": "c(\nperson(\"Megan\", \"Winton\", email = \"megan.winton@gmail.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-2628-7022\")),\nperson(\"Michael\", \"O'Brien\", email = \"mike@obrien.page\", role = \"cre\",\ncomment = c(ORCID = \"0000-0003-1420-6395\")),\nperson(\"Benjamin L.\", \"Hlina\", email = \"benjamin.hlina@gmail.com\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-4178-4900\")))",
  "License": "GPL (>=3)",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "ByteCompile": "true",
  "SystemRequirements": "GNU make",
  "NeedsCompilation": "yes",
  "Biarch": "true",
  "Config/testthat/edition": "3",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "Roxygen": "list(markdown = TRUE)",
  "Config/pak/sysreqs": "make",
  "Repository": "https://mhpob.r-universe.dev",
  "Date/Publication": "2025-08-26 12:33:47 UTC",
  "RemoteUrl": "https://github.com/meganwinton/TelemetrySpace",
  "RemoteRef": "HEAD",
  "RemoteSha": "62494d08afae0521d9ddacf80431a7527b931e4e",
  "Packaged": {
    "Date": "2026-05-23 22:23:50 UTC",
    "User": "root"
  },
  "Author": "Megan Winton [aut] (ORCID: <https://orcid.org/0000-0003-2628-7022>),\nMichael O'Brien [cre] (ORCID: <https://orcid.org/0000-0003-1420-6395>),\nBenjamin L. Hlina [ctb] (ORCID:\n<https://orcid.org/0000-0002-4178-4900>)",
  "Maintainer": "Michael O'Brien <mike@obrien.page>",
  "MD5sum": "818c538bae80c71bce392d467aa1b328",
  "_user": "mhpob",
  "_type": "src",
  "_file": "TelemetrySpace_1.1.0.tar.gz",
  "_fileid": "bccd271f6ab1f49702b005d2289e22154e04fe472087f62aadbc086edb3f81f3",
  "_filesize": 389488,
  "_sha256": "bccd271f6ab1f49702b005d2289e22154e04fe472087f62aadbc086edb3f81f3",
  "_created": "2026-05-23T22:23:50.000Z",
  "_published": "2026-05-23T22:38:23.456Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77553814588,
      "time": 487,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7180274100"
    },
    {
      "job": 77553814589,
      "time": 554,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7180281016"
    },
    {
      "job": 77553814584,
      "time": 470,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7180272534"
    },
    {
      "job": 77553814587,
      "time": 560,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7180281586"
    },
    {
      "job": 77553814549,
      "time": 292,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7180255516"
    },
    {
      "job": 77553814557,
      "time": 674,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7180292982"
    },
    {
      "job": 77553814571,
      "time": 335,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7180259371"
    },
    {
      "job": 77553814551,
      "time": 677,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7180292925"
    },
    {
      "job": 77553351222,
      "time": 519,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7180226605"
    },
    {
      "job": 77553814537,
      "time": 188,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 77553814544,
      "time": 699,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7180294823"
    },
    {
      "job": 77553814572,
      "time": 685,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7180293491"
    },
    {
      "job": 77553814550,
      "time": 652,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7180290531"
    }
  ],
  "_buildurl": "https://github.com/r-universe/mhpob/actions/runs/26327785601",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/meganwinton/TelemetrySpace",
  "_commit": {
    "id": "62494d08afae0521d9ddacf80431a7527b931e4e",
    "author": "Mike O'Brien <mike@obrien.page>",
    "committer": "Mike O'Brien <mike@obrien.page>",
    "message": "knit vignette after lowercase updates\n",
    "time": 1756211627
  },
  "_maintainer": {
    "name": "Michael OBrien",
    "email": "mike@obrien.page",
    "login": "mhpob",
    "mastodon": "@mobrien@fosstodon.org",
    "bluesky": "@obrien.page",
    "orcid": "0000-0003-1420-6395",
    "description": "Faculty Research Assistant at the Chesapeake Biological Laboratory",
    "uuid": 8228205
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.12.17",
      "role": "Depends"
    },
    {
      "package": "BH",
      "version": ">= 1.66.0-1",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.12.17",
      "role": "LinkingTo"
    },
    {
      "package": "RcppEigen",
      "version": ">= 0.3.3.4.0",
      "role": "LinkingTo"
    },
    {
      "package": "RcppParallel",
      "version": ">= 5.0.1",
      "role": "LinkingTo"
    },
    {
      "package": "rstan",
      "version": ">= 2.18.1",
      "role": "LinkingTo"
    },
    {
      "package": "StanHeaders",
      "version": ">= 2.18.0",
      "role": "LinkingTo"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "RcppParallel",
      "version": ">= 5.0.1",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "rstan",
      "version": ">= 2.18.1",
      "role": "Imports"
    },
    {
      "package": "rstantools",
      "version": ">= 2.4.0",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "ggpubr",
      "role": "Suggests"
    },
    {
      "package": "hexbin",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tidyr",
      "role": "Suggests"
    }
  ],
  "_owner": "meganwinton",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-23",
      "n": 10
    },
    {
      "week": "2025-24",
      "n": 1
    },
    {
      "week": "2025-34",
      "n": 2
    },
    {
      "week": "2025-35",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "v1.1.0",
      "date": "2025-08-22"
    }
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "benjaminhlina",
      "count": 156,
      "uuid": 29612410
    },
    {
      "user": "mhpob",
      "count": 30,
      "uuid": 8228205
    },
    {
      "user": "meganwinton",
      "count": 12,
      "uuid": 15893835
    }
  ],
  "_userbio": {
    "uuid": 8228205,
    "type": "user",
    "name": "Mike O'Brien",
    "description": "Faculty Research Assistant at the Chesapeake Biological Laboratory"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/TelemetrySpace"
  },
  "_devurl": "https://github.com/meganwinton/telemetryspace",
  "_searchresults": 6,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/TelemetrySpace.html",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "COA_Standard",
    "COA_TagInt",
    "COA_TimeVarying",
    "distf"
  ],
  "_datasets": [
    {
      "name": "example_extent",
      "title": "Example array extent",
      "object": "example_extent",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ylim",
        "xlim"
      ],
      "rows": 2,
      "table": true,
      "tojson": true
    },
    {
      "name": "fishdat",
      "title": "Black sea bass detection data",
      "object": "fishdat",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "Station",
        "Transmitter",
        "east",
        "north",
        "hour"
      ],
      "rows": 3002,
      "table": true,
      "tojson": true
    },
    {
      "name": "model_param_ex",
      "title": "Example model parameters",
      "object": "model_param_ex",
      "class": [
        "data.frame"
      ],
      "fields": [
        "nind",
        "nrec",
        "tsteps",
        "ntrans"
      ],
      "rows": 1,
      "table": true,
      "tojson": true
    },
    {
      "name": "rlocs",
      "title": "Receiver locations from a black sea bass array",
      "object": "rlocs",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "Station",
        "east",
        "north"
      ],
      "rows": 30,
      "table": true,
      "tojson": true
    },
    {
      "name": "testdat",
      "title": "Stationary test transmitter data",
      "object": "testdat",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "Station",
        "Transmitter",
        "east",
        "north",
        "hour"
      ],
      "rows": 4799,
      "table": true,
      "tojson": true
    },
    {
      "name": "testloc",
      "title": "Location of a stationary test transmitter placed in the black sea bass array",
      "object": "testloc",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "east",
        "north"
      ],
      "rows": 1,
      "table": true,
      "tojson": true
    },
    {
      "name": "testY",
      "title": "Counts of detection per time steps for test tag",
      "object": "testY",
      "class": [
        "array"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "Y",
      "title": "Counts of detection per time steps",
      "object": "Y",
      "class": [
        "array"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "TelemetrySpace-package",
      "title": "The 'TelemetrySpace' package.",
      "topics": [
        "TelemetrySpace-package",
        "TelemetrySpace"
      ]
    },
    {
      "page": "COA_Standard",
      "title": "Fits a Bayesian Spatial Point Process model to estimate individual centers of activity from acoustic telemetry data using Stan",
      "topics": [
        "COA_Standard"
      ]
    },
    {
      "page": "COA_TagInt",
      "title": "Fits a test-tag integrated Bayesian Spatial Point Process model to estimate individual centers of activity from acoustic telemetry data using Stan",
      "topics": [
        "COA_TagInt"
      ]
    },
    {
      "page": "COA_TimeVarying",
      "title": "Fits a test-tag integrated Bayesian Spatial Point Process model to estimate individual centers of activity from acoustic telemetry data using Stan",
      "topics": [
        "COA_TimeVarying"
      ]
    },
    {
      "page": "distf",
      "title": "Calculate Euclidean distance between receivers and activity centers",
      "topics": [
        "distf"
      ]
    },
    {
      "page": "example_extent",
      "title": "Example array extent",
      "topics": [
        "example_extent"
      ]
    },
    {
      "page": "fishdat",
      "title": "Black sea bass detection data",
      "topics": [
        "fishdat"
      ]
    },
    {
      "page": "model_param_ex",
      "title": "Example model parameters",
      "topics": [
        "model_param_ex"
      ]
    },
    {
      "page": "rlocs",
      "title": "Receiver locations from a black sea bass array",
      "topics": [
        "rlocs"
      ]
    },
    {
      "page": "testdat",
      "title": "Stationary test transmitter data",
      "topics": [
        "testdat"
      ]
    },
    {
      "page": "testloc",
      "title": "Location of a stationary test transmitter placed in the black sea bass array",
      "topics": [
        "testloc"
      ]
    },
    {
      "page": "testY",
      "title": "Counts of detection per time steps for test tag",
      "topics": [
        "testY"
      ]
    },
    {
      "page": "Y",
      "title": "Counts of detection per time steps",
      "topics": [
        "Y"
      ]
    }
  ],
  "_readme": "https://github.com/meganwinton/TelemetrySpace/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "backports",
    "BH",
    "callr",
    "checkmate",
    "cli",
    "cpp11",
    "desc",
    "distributional",
    "dplyr",
    "farver",
    "generics",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "inline",
    "isoband",
    "labeling",
    "lifecycle",
    "loo",
    "magrittr",
    "matrixStats",
    "numDeriv",
    "pillar",
    "pkgbuild",
    "pkgconfig",
    "posterior",
    "processx",
    "ps",
    "QuickJSR",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "RcppParallel",
    "rlang",
    "rstan",
    "rstantools",
    "S7",
    "scales",
    "StanHeaders",
    "tensorA",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "Estimate_COA_vignette.Rmd",
      "filename": "Estimate_COA_vignette.html",
      "title": "Estimate activity centers from acoustic telemetry data",
      "author": "Megan Winton",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Data preparation",
        "Fit the standard COA model",
        "Fit a COA model that allows for receiver- and time-specific detection probabilities",
        "Fit a model that uses detections from a moored test tag to inform detection probabilities",
        "Comparison",
        "References"
      ],
      "created": "2018-06-03 15:19:03",
      "modified": "2025-08-26 12:33:47",
      "commits": 12
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": false,
  "_nocasepkg": "telemetryspace",
  "_universes": [
    "mhpob"
  ],
  "_indexurl": "https://trackyverse.r-universe.dev/TelemetrySpace",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-05-23T22:29:20.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "62494d08afae0521d9ddacf80431a7527b931e4e",
      "fileid": "67d4f6bd3e4abf30d5ce89c85742077a6aa5372e8c9c023aa5210c20f4373cf6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mhpob/actions/runs/26327785601"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-05-23T22:29:04.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "62494d08afae0521d9ddacf80431a7527b931e4e",
      "fileid": "308b6b68115bc32da7d6cd5af3754ceb87a0d71ea39098a61a10f5d0dce571e2",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mhpob/actions/runs/26327785601"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-05-23T22:28:59.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "62494d08afae0521d9ddacf80431a7527b931e4e",
      "fileid": "727212a1d535efca0546a0d145e73647be21fd652e62124fe7c4e50b71ab67da",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mhpob/actions/runs/26327785601"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-05-23T22:29:25.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "62494d08afae0521d9ddacf80431a7527b931e4e",
      "fileid": "ee9f2a282cd1c8edfbc1e48de2b4eea91fd103aceacfd1251534fc73018420a3",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mhpob/actions/runs/26327785601"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-05-23T22:27:47.000Z",
      "arch": "aarch64",
      "commit": "62494d08afae0521d9ddacf80431a7527b931e4e",
      "fileid": "512199569951f7684171db29d1b1da090ae10a4a296f17fa9947bde875c6bd98",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mhpob/actions/runs/26327785601"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-05-23T22:29:11.000Z",
      "arch": "x86_64",
      "commit": "62494d08afae0521d9ddacf80431a7527b931e4e",
      "fileid": "fb690c3aa11c949b97b047d7edb1d1c251106699d6180d8cfe9e8217a98bba36",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mhpob/actions/runs/26327785601"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-05-23T22:27:56.000Z",
      "arch": "aarch64",
      "commit": "62494d08afae0521d9ddacf80431a7527b931e4e",
      "fileid": "199573a85100d3c8700e6cb26b4af744fac71a1735a37da06b1c756bf8ece9e1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mhpob/actions/runs/26327785601"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-05-23T22:28:58.000Z",
      "arch": "x86_64",
      "commit": "62494d08afae0521d9ddacf80431a7527b931e4e",
      "fileid": "cd471765e51c4f6a6ecd2222679baab00c02ae8889b5764d36071d0304748fd4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mhpob/actions/runs/26327785601"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-05-23T22:28:46.000Z",
      "arch": "x86_64",
      "commit": "62494d08afae0521d9ddacf80431a7527b931e4e",
      "fileid": "90fe9ae59a4db30ff23d437d0846aae9622e165d0a05bf9b2e9b6fc85ba73f33",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mhpob/actions/runs/26327785601"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-05-23T22:28:06.000Z",
      "arch": "x86_64",
      "commit": "62494d08afae0521d9ddacf80431a7527b931e4e",
      "fileid": "d77817e5d5708fe464f98642ddd7c06379966e4b192a0dcdc6b4a23627da6732",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mhpob/actions/runs/26327785601"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-05-23T22:27:54.000Z",
      "arch": "x86_64",
      "commit": "62494d08afae0521d9ddacf80431a7527b931e4e",
      "fileid": "61ed1f1c28de93cafd10d25d55e8cd4c0978b2ef82b78b7c19d9b28589cc4017",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mhpob/actions/runs/26327785601"
    }
  ]
}